STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO58638.1Hypothetical protein. (137 aa)    
Predicted Functional Partners:
SDO76930.1
Hypothetical protein.
 
      0.862
SDP64106.1
Hypothetical protein.
  
     0.739
SDP52196.1
Protein of unknown function.
  
     0.689
SDO58680.1
Acetyltransferase (GNAT) family protein.
 
     0.579
SDP72328.1
Protein of unknown function.
  
     0.568
SDP48534.1
Protein of unknown function.
  
     0.537
SDP72889.1
Protein of unknown function.
  
     0.536
SDO87387.1
Protein of unknown function.
  
     0.504
SDP36634.1
Catechol 2,3-dioxygenase.
  
     0.470
SDP16155.1
DSBA-like thioredoxin domain-containing protein.
  
     0.463
Your Current Organism:
Phycicoccus dokdonensis
NCBI taxonomy Id: 443156
Other names: CCUG 54521, DSM 22329, KCTC 19248, P. dokdonensis, Phycicoccus dokdonensis Yoon et al. 2008, strain DS-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.