STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO70313.1Hypothetical protein. (558 aa)    
Predicted Functional Partners:
SDO77619.1
EDD domain protein, DegV family.
   0.998
SDO70363.1
ATP-dependent DNA helicase RecG.
  
    0.912
SDO70427.1
16S rRNA (guanine966-N2)-methyltransferase.
 
     0.670
rpmB
LSU ribosomal protein L28P; Belongs to the bacterial ribosomal protein bL28 family.
       0.584
SDO70394.1
Pimeloyl-ACP methyl ester carboxylesterase.
       0.527
SDP06617.1
DNA replication and repair protein RecN; May be involved in recombinational repair of damaged DNA.
   
    0.434
SDP54740.1
Serine/threonine protein kinase.
    0.423
SDO85149.1
Serine/threonine protein kinase.
    0.411
Your Current Organism:
Phycicoccus dokdonensis
NCBI taxonomy Id: 443156
Other names: CCUG 54521, DSM 22329, KCTC 19248, P. dokdonensis, Phycicoccus dokdonensis Yoon et al. 2008, strain DS-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.