STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO77035.1Phytoene dehydrogenase-related protein. (530 aa)    
Predicted Functional Partners:
SDO77075.1
Polyketide cyclase / dehydrase and lipid transport.
 
    0.677
SDO76998.1
Uncharacterized membrane protein YhhN.
       0.618
SDO76965.1
Protein of unknown function.
       0.569
SDP32614.1
linoleoyl-CoA desaturase.
 
  
 0.462
SDP49434.1
Hypothetical protein.
 
     0.422
SDO87355.1
Magnesium chelatase subunit I.
  
 
 0.418
SDP73448.1
Acetyl/propionyl-CoA carboxylase, alpha subunit.
    
  0.418
Your Current Organism:
Phycicoccus dokdonensis
NCBI taxonomy Id: 443156
Other names: CCUG 54521, DSM 22329, KCTC 19248, P. dokdonensis, Phycicoccus dokdonensis Yoon et al. 2008, strain DS-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.