STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO82925.1Hypothetical protein. (71 aa)    
Predicted Functional Partners:
SDO82884.1
Energy-coupling factor transport system ATP-binding protein.
 
     0.633
SDO61035.1
tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)-like.
  
     0.627
SDO94796.1
Single-strand DNA-binding protein.
  
     0.613
SDO76238.1
Radical SAM-linked protein.
  
     0.510
SDO65329.1
Hypothetical protein.
  
     0.488
SDP70504.1
Hypothetical protein.
  
     0.432
SDP16098.1
Stage II sporulation protein E (SpoIIE).
  
     0.407
SDO76072.1
Radical SAM family uncharacterized protein.
  
     0.401
Your Current Organism:
Phycicoccus dokdonensis
NCBI taxonomy Id: 443156
Other names: CCUG 54521, DSM 22329, KCTC 19248, P. dokdonensis, Phycicoccus dokdonensis Yoon et al. 2008, strain DS-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.