STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO89179.1DNA-binding transcriptional regulator, ArsR family. (105 aa)    
Predicted Functional Partners:
SDO89210.1
Uncharacterized conserved protein YndB, AHSA1/START domain.
 
    0.807
SDO89138.1
DNA-binding transcriptional regulator, MerR family.
       0.574
SDP16883.1
Uncharacterized conserved protein YndB, AHSA1/START domain.
 
    0.539
SDO89067.1
ABC-2 type transport system ATP-binding protein.
       0.501
SDO89102.1
ABC-2 type transport system permease protein.
       0.501
Your Current Organism:
Phycicoccus dokdonensis
NCBI taxonomy Id: 443156
Other names: CCUG 54521, DSM 22329, KCTC 19248, P. dokdonensis, Phycicoccus dokdonensis Yoon et al. 2008, strain DS-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.