SDO90626.1 protein (Phycicoccus dokdonensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SDO90626.1

Uncharacterized protein. (185 aa)

Predicted Functional Partners:

SDO90545.1

0.762

SDO90582.1

0.762

SDP45966.1

0.557

SDO90506.1

0.536

trmB

0.523

SDO90669.1

0.457

SDO90716.1

0.457

SDO90765.1

0.457

SDO84234.1

0.403

pheT

0.400

Your Current Organism:

Phycicoccus dokdonensis

NCBI taxonomy Id: 443156
Other names: CCUG 54521, DSM 22329, KCTC 19248, P. dokdonensis, Phycicoccus dokdonensis Yoon et al. 2008, strain DS-8

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDO84234.1	SDO90626.1	SAMN04489867_0728	SAMN04489867_0912	DNA polymerase-3 subunit epsilon.	Uncharacterized protein.	0.403
SDO84234.1	pheT	SAMN04489867_0728	SAMN04489867_1350	DNA polymerase-3 subunit epsilon.	phenylalanyl-tRNA synthetase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.	0.541
SDO90506.1	SDO90545.1	SAMN04489867_0909	SAMN04489867_0910	Hypothetical protein.	Hypothetical protein.	0.543
SDO90506.1	SDO90582.1	SAMN04489867_0909	SAMN04489867_0911	Hypothetical protein.	Hypothetical protein.	0.543
SDO90506.1	SDO90626.1	SAMN04489867_0909	SAMN04489867_0912	Hypothetical protein.	Uncharacterized protein.	0.536
SDO90545.1	SDO90506.1	SAMN04489867_0910	SAMN04489867_0909	Hypothetical protein.	Hypothetical protein.	0.543
SDO90545.1	SDO90582.1	SAMN04489867_0910	SAMN04489867_0911	Hypothetical protein.	Hypothetical protein.	0.773
SDO90545.1	SDO90626.1	SAMN04489867_0910	SAMN04489867_0912	Hypothetical protein.	Uncharacterized protein.	0.762
SDO90545.1	SDO90669.1	SAMN04489867_0910	SAMN04489867_0913	Hypothetical protein.	Carboxymethylenebutenolidase.	0.451
SDO90545.1	SDO90716.1	SAMN04489867_0910	SAMN04489867_0914	Hypothetical protein.	Hypothetical protein.	0.451
SDO90545.1	SDO90765.1	SAMN04489867_0910	SAMN04489867_0915	Hypothetical protein.	Hypothetical protein.	0.451
SDO90582.1	SDO90506.1	SAMN04489867_0911	SAMN04489867_0909	Hypothetical protein.	Hypothetical protein.	0.543
SDO90582.1	SDO90545.1	SAMN04489867_0911	SAMN04489867_0910	Hypothetical protein.	Hypothetical protein.	0.773
SDO90582.1	SDO90626.1	SAMN04489867_0911	SAMN04489867_0912	Hypothetical protein.	Uncharacterized protein.	0.762
SDO90582.1	SDO90669.1	SAMN04489867_0911	SAMN04489867_0913	Hypothetical protein.	Carboxymethylenebutenolidase.	0.451
SDO90582.1	SDO90716.1	SAMN04489867_0911	SAMN04489867_0914	Hypothetical protein.	Hypothetical protein.	0.451
SDO90582.1	SDO90765.1	SAMN04489867_0911	SAMN04489867_0915	Hypothetical protein.	Hypothetical protein.	0.451
SDO90626.1	SDO84234.1	SAMN04489867_0912	SAMN04489867_0728	Uncharacterized protein.	DNA polymerase-3 subunit epsilon.	0.403
SDO90626.1	SDO90506.1	SAMN04489867_0912	SAMN04489867_0909	Uncharacterized protein.	Hypothetical protein.	0.536
SDO90626.1	SDO90545.1	SAMN04489867_0912	SAMN04489867_0910	Uncharacterized protein.	Hypothetical protein.	0.762