STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO99633.1Iron-regulated ABC transporter permease protein SufD. (397 aa)    
Predicted Functional Partners:
SDO99563.1
Fe-S cluster assembly ATP-binding protein.
 
 0.999
SDO99491.1
Nitrogen fixation protein NifU.
 
  
 0.987
SDO99526.1
Cysteine desulfurase / selenocysteine lyase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
 0.983
SDP13881.1
Selenocysteine lyase/Cysteine desulfurase.
 
 0.918
SDP52277.1
Cysteine desulfurase family protein, VC1184 subfamily.
 
 0.883
SDO99451.1
Metal-sulfur cluster biosynthetic enzyme.
 
   
 0.865
SDO99673.1
Iron-regulated ABC transporter membrane component SufB.
 
   
0.856
SDO99599.1
3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin subunit.
 
     0.842
SDO99707.1
Predicted transcriptional regulator, ArsR family.
  
    0.716
SDO99415.1
Hypothetical protein.
       0.608
Your Current Organism:
Phycicoccus dokdonensis
NCBI taxonomy Id: 443156
Other names: CCUG 54521, DSM 22329, KCTC 19248, P. dokdonensis, Phycicoccus dokdonensis Yoon et al. 2008, strain DS-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.