STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO99707.1Predicted transcriptional regulator, ArsR family. (266 aa)    
Predicted Functional Partners:
SDO99673.1
Iron-regulated ABC transporter membrane component SufB.
  
    0.969
SDO77801.1
NAD-dependent protein deacetylase, SIR2 family.
   
    0.801
SDP23625.1
DNA-binding transcriptional regulator, MarR family.
   
    0.784
SDO96320.1
Alkyl hydroperoxide reductase subunit AhpC (peroxiredoxin).
  
    0.750
SDO99633.1
Iron-regulated ABC transporter permease protein SufD.
  
    0.716
SDP45813.1
Cell envelope-related function transcriptional attenuator common domain-containing protein.
  
    0.707
SDP29112.1
Cell envelope-related function transcriptional attenuator common domain-containing protein.
  
    0.698
SDO99599.1
3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin subunit.
       0.684
SDO99491.1
Nitrogen fixation protein NifU.
  
  
 0.670
nuoI
NADH dehydrogenase subunit I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
    
   0.656
Your Current Organism:
Phycicoccus dokdonensis
NCBI taxonomy Id: 443156
Other names: CCUG 54521, DSM 22329, KCTC 19248, P. dokdonensis, Phycicoccus dokdonensis Yoon et al. 2008, strain DS-8
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