STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP08477.1Hypothetical protein; Manually curated. (99 aa)    
Predicted Functional Partners:
SDO95355.1
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
    
 0.738
SDP02583.1
Glutamate synthase (NADH) large subunit.
   
 
  0.687
SDP72526.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
  0.673
SDP73448.1
Acetyl/propionyl-CoA carboxylase, alpha subunit.
 
  
  0.600
SDP08523.1
Hypothetical protein.
       0.501
SDP06027.1
FR47-like protein.
  
     0.440
SDP58669.1
4a-hydroxytetrahydrobiopterin dehydratase.
  
     0.421
rnc
RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.408
Your Current Organism:
Phycicoccus dokdonensis
NCBI taxonomy Id: 443156
Other names: CCUG 54521, DSM 22329, KCTC 19248, P. dokdonensis, Phycicoccus dokdonensis Yoon et al. 2008, strain DS-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.