STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP18553.1Hypothetical protein. (94 aa)    
Predicted Functional Partners:
SDP18622.1
TrbL/VirB6 plasmid conjugal transfer protein.
 
     0.827
SDP18653.1
Putative type VII ESX secretion system translocon, EccE.
 
     0.801
SDP18695.1
Hypothetical protein; Manually curated.
 
     0.800
SDP18979.1
TraM recognition site of TraD and TraG; Manually curated.
 
     0.788
SDP18324.1
Conjugative relaxase domain-containing protein, TrwC/TraI family.
  
     0.773
SDP18526.1
NlpC/P60 family protein.
 
     0.671
SDP61438.1
Type IV secretion system protein VirD4.
 
     0.553
SDP61363.1
Hypothetical protein; Manually curated.
 
     0.448
Your Current Organism:
Phycicoccus dokdonensis
NCBI taxonomy Id: 443156
Other names: CCUG 54521, DSM 22329, KCTC 19248, P. dokdonensis, Phycicoccus dokdonensis Yoon et al. 2008, strain DS-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.