Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDO62252.1 | SDO93723.1 | SAMN04489867_0175 | SAMN04489867_0980 | Putative hydrolase. | MerR HTH family regulatory protein. | 0.520 |
SDO62252.1 | SDP20958.1 | SAMN04489867_0175 | SAMN04489867_1739 | Putative hydrolase. | Protein of unknown function. | 0.696 |
SDO62252.1 | SDP54142.1 | SAMN04489867_0175 | SAMN04489867_2846 | Putative hydrolase. | Transmembrane protein of unknown function. | 0.543 |
SDO62252.1 | nucS | SAMN04489867_0175 | SAMN04489867_0298 | Putative hydrolase. | Hypothetical protein; Cleaves both 3' and 5' ssDNA extremities of branched DNA structures; Belongs to the NucS endonuclease family. | 0.576 |
SDO62252.1 | whiB-2 | SAMN04489867_0175 | SAMN04489867_1842 | Putative hydrolase. | Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.694 |
SDO62252.1 | whiB-3 | SAMN04489867_0175 | SAMN04489867_1931 | Putative hydrolase. | Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.605 |
SDO82244.1 | SDO93723.1 | SAMN04489867_0677 | SAMN04489867_0980 | Protein of unknown function. | MerR HTH family regulatory protein. | 0.769 |
SDO82244.1 | SDP20958.1 | SAMN04489867_0677 | SAMN04489867_1739 | Protein of unknown function. | Protein of unknown function. | 0.708 |
SDO82244.1 | SDP54142.1 | SAMN04489867_0677 | SAMN04489867_2846 | Protein of unknown function. | Transmembrane protein of unknown function. | 0.671 |
SDO82244.1 | nucS | SAMN04489867_0677 | SAMN04489867_0298 | Protein of unknown function. | Hypothetical protein; Cleaves both 3' and 5' ssDNA extremities of branched DNA structures; Belongs to the NucS endonuclease family. | 0.501 |
SDO82244.1 | whiB-2 | SAMN04489867_0677 | SAMN04489867_1842 | Protein of unknown function. | Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.606 |
SDO93723.1 | SDO62252.1 | SAMN04489867_0980 | SAMN04489867_0175 | MerR HTH family regulatory protein. | Putative hydrolase. | 0.520 |
SDO93723.1 | SDO82244.1 | SAMN04489867_0980 | SAMN04489867_0677 | MerR HTH family regulatory protein. | Protein of unknown function. | 0.769 |
SDO93723.1 | SDP20958.1 | SAMN04489867_0980 | SAMN04489867_1739 | MerR HTH family regulatory protein. | Protein of unknown function. | 0.751 |
SDO93723.1 | SDP54142.1 | SAMN04489867_0980 | SAMN04489867_2846 | MerR HTH family regulatory protein. | Transmembrane protein of unknown function. | 0.660 |
SDO93723.1 | nucS | SAMN04489867_0980 | SAMN04489867_0298 | MerR HTH family regulatory protein. | Hypothetical protein; Cleaves both 3' and 5' ssDNA extremities of branched DNA structures; Belongs to the NucS endonuclease family. | 0.702 |
SDO93723.1 | whiB-2 | SAMN04489867_0980 | SAMN04489867_1842 | MerR HTH family regulatory protein. | Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.772 |
SDO93723.1 | whiB-3 | SAMN04489867_0980 | SAMN04489867_1931 | MerR HTH family regulatory protein. | Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.824 |
SDO93723.1 | whiB-7 | SAMN04489867_0980 | SAMN04489867_3350 | MerR HTH family regulatory protein. | Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.686 |
SDP20958.1 | SDO62252.1 | SAMN04489867_1739 | SAMN04489867_0175 | Protein of unknown function. | Putative hydrolase. | 0.696 |
page 1 of 4