STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP25917.1Pilus assembly protein CpaF. (454 aa)    
Predicted Functional Partners:
SDP25952.1
Pilus assembly protein CpaE.
  
 0.972
SDP25837.1
Tight adherence protein C.
 
  
 0.969
SDP25873.1
Tight adherence protein B.
 
    0.968
SDP25992.1
Pilus assembly protein CpaB.
 
  
 0.886
SDP24277.1
Tight adherence protein C.
 
  
 0.824
SDP26321.1
Flp pilus assembly protein TadG.
 
    0.792
SDP26023.1
Hypothetical protein.
       0.681
SDP26418.1
Flp pilus assembly protein TadG.
 
    0.633
SDP26050.1
Pilus assembly protein Flp/PilA.
 
  
 0.587
SDP67694.1
Tight adherence protein B.
  
  
 0.449
Your Current Organism:
Phycicoccus dokdonensis
NCBI taxonomy Id: 443156
Other names: CCUG 54521, DSM 22329, KCTC 19248, P. dokdonensis, Phycicoccus dokdonensis Yoon et al. 2008, strain DS-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.