STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP44950.1Glyoxylase, beta-lactamase superfamily II. (227 aa)    
Predicted Functional Partners:
SDP44985.1
S-(hydroxymethyl)mycothiol dehydrogenase.
    0.938
SDP20013.1
Glyoxylase, beta-lactamase superfamily II.
  
  
  0.795
SDO92548.1
Glyoxylase, beta-lactamase superfamily II.
  
  
 
0.768
SDO61217.1
Adenylyltransferase and sulfurtransferase.
  
  0.715
SDP62585.1
Sulfide:quinone oxidoreductase.
   
  0.703
SDP62654.1
Rhodanese-related sulfurtransferase.
  
  0.680
SDP59969.1
Rhodanese-related sulfurtransferase.
  
  0.670
SDP63124.1
Glyoxylase, beta-lactamase superfamily II.
  
  0.653
ispF
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4-diphosphocytidyl-2- C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP).
       0.605
cysS
cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.566
Your Current Organism:
Phycicoccus dokdonensis
NCBI taxonomy Id: 443156
Other names: CCUG 54521, DSM 22329, KCTC 19248, P. dokdonensis, Phycicoccus dokdonensis Yoon et al. 2008, strain DS-8
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