STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP47136.1Hypothetical protein; Belongs to the pirin family. (329 aa)    
Predicted Functional Partners:
SDP47164.1
Hypothetical protein.
       0.773
SDP47219.1
NADP-dependent 3-hydroxy acid dehydrogenase YdfG; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
    0.672
SDP47191.1
Hypothetical protein.
       0.671
SDP47100.1
Lysophospholipase, alpha-beta hydrolase superfamily.
       0.550
SDP47302.1
DNA-binding transcriptional regulator YhcF, GntR family.
 
     0.507
SDP47072.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
       0.495
SDP47242.1
Putative hydrolase.
       0.441
SDP68146.1
Aromatic ring-opening dioxygenase, catalytic subunit, LigB family.
 
  
 0.428
Your Current Organism:
Phycicoccus dokdonensis
NCBI taxonomy Id: 443156
Other names: CCUG 54521, DSM 22329, KCTC 19248, P. dokdonensis, Phycicoccus dokdonensis Yoon et al. 2008, strain DS-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.