STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP51114.1Putative spermidine/putrescine transport system permease protein. (272 aa)    
Predicted Functional Partners:
SDP51056.1
Putative spermidine/putrescine transport system substrate-binding protein.
 
 
 0.999
SDP51087.1
Putative spermidine/putrescine transport system permease protein.
 
 0.999
SDO73844.1
Spermidine/putrescine transport system permease protein.
 
 0.998
SDP51028.1
Putative spermidine/putrescine transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.998
SDO73782.1
Spermidine/putrescine transport system substrate-binding protein.
 
 0.995
SDO73808.1
Spermidine/putrescine transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.963
SDP47044.1
iron(III) transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.899
SDP44667.1
Carbohydrate ABC transporter ATP-binding protein, CUT1 family; Belongs to the ABC transporter superfamily.
  
 0.792
SDP51141.1
Protein of unknown function.
       0.762
SDP46980.1
iron(III) transport system substrate-binding protein.
  
 
  0.722
Your Current Organism:
Phycicoccus dokdonensis
NCBI taxonomy Id: 443156
Other names: CCUG 54521, DSM 22329, KCTC 19248, P. dokdonensis, Phycicoccus dokdonensis Yoon et al. 2008, strain DS-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.