STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP51764.1Xylulokinase; Belongs to the FGGY kinase family. (472 aa)    
Predicted Functional Partners:
xylA
Xylose isomerase; Belongs to the xylose isomerase family.
 
 
 0.992
SDP04625.1
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
    
 0.928
SDP51747.1
Mannitol 2-dehydrogenase.
 
  
 0.888
SDP51696.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
 
     0.832
SDP51674.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family.
 
     0.830
SDP51720.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family.
 
    0.816
SDP53961.1
6-phosphogluconate dehydrogenase (decarboxylating).
  
 
 0.793
tdh
L-threonine 3-dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-threonine to 2- amino-3-ketobutyrate; Belongs to the zinc-containing alcohol dehydrogenase family.
 
 
 0.790
SDP16119.1
Ribose 5-phosphate isomerase B.
    
 0.775
SDP48024.1
Zinc-binding dehydrogenase.
  
 
 0.766
Your Current Organism:
Phycicoccus dokdonensis
NCBI taxonomy Id: 443156
Other names: CCUG 54521, DSM 22329, KCTC 19248, P. dokdonensis, Phycicoccus dokdonensis Yoon et al. 2008, strain DS-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.