STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP52777.1Protein of unknown function. (525 aa)    
Predicted Functional Partners:
SDO94796.1
Single-strand DNA-binding protein.
  
     0.561
SDP33568.1
Predicted arabinose efflux permease, MFS family.
  
     0.543
rplI
LSU ribosomal protein L9P; Binds to the 23S rRNA.
       0.478
SDP28034.1
Hypothetical protein.
  
     0.443
SDO94952.1
D-alanyl-D-alanine carboxypeptidase.
  
     0.438
SDP14885.1
Protein of unknown function.
  
     0.438
rpsR
SSU ribosomal protein S18P; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
       0.435
SDP60932.1
Flp pilus assembly protein TadB.
  
     0.433
SDP67714.1
Type II secretion system (T2SS), protein F.
  
     0.428
SDP61006.1
TadE-like protein.
  
     0.420
Your Current Organism:
Phycicoccus dokdonensis
NCBI taxonomy Id: 443156
Other names: CCUG 54521, DSM 22329, KCTC 19248, P. dokdonensis, Phycicoccus dokdonensis Yoon et al. 2008, strain DS-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.