STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP53671.1Thioredoxin; Belongs to the thioredoxin family. (108 aa)    
Predicted Functional Partners:
SDP53645.1
Thioredoxin reductase (NADPH).
 0.991
SDP56120.1
Thioredoxin reductase (NADPH).
 
 0.988
SDO98205.1
Thioredoxin reductase (NADPH).
 
 0.807
SDO95647.1
Thioredoxin reductase.
  
 0.806
SDP23826.1
Thioredoxin reductase (NADPH).
 
 0.790
SDO96320.1
Alkyl hydroperoxide reductase subunit AhpC (peroxiredoxin).
  
 
 0.755
SDO96826.1
Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
    
 0.717
rho
Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.
 
    0.711
SDP02583.1
Glutamate synthase (NADH) large subunit.
    
 
 0.707
SDO88517.1
GTP cyclohydrolase II.
    
  0.701
Your Current Organism:
Phycicoccus dokdonensis
NCBI taxonomy Id: 443156
Other names: CCUG 54521, DSM 22329, KCTC 19248, P. dokdonensis, Phycicoccus dokdonensis Yoon et al. 2008, strain DS-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.