STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP54634.1Uncharacterized conserved protein YlxW, UPF0749 family. (250 aa)    
Predicted Functional Partners:
SDO93465.1
Small basic protein.
 
    0.862
SDP54715.1
Para-aminobenzoate synthetase component 2.
       0.818
SDP54659.1
Sortase A.
       0.813
SDP54689.1
Hypothetical protein.
       0.813
SDO93504.1
Uncharacterized conserved protein YlxW, UPF0749 family.
  
     0.775
crgA
Uncharacterised protein family (UPF0233); Involved in cell division; Belongs to the CrgA family.
       0.634
SDP64805.1
Transcription regulator of the Arc/MetJ class.
  
     0.514
SDP39218.1
Uncharacterized conserved protein YabE, contains G5 and tandem DUF348 domains.
  
     0.472
SDP31296.1
2'-5' RNA ligase.
  
     0.419
Your Current Organism:
Phycicoccus dokdonensis
NCBI taxonomy Id: 443156
Other names: CCUG 54521, DSM 22329, KCTC 19248, P. dokdonensis, Phycicoccus dokdonensis Yoon et al. 2008, strain DS-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.