STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP60326.1Two-component system, OmpR family, response regulator. (244 aa)    
Predicted Functional Partners:
SDP63401.1
Signal transduction histidine kinase.
0.999
SDP47427.1
Hypothetical protein.
 0.994
SDO88923.1
Hypothetical protein.
 0.992
SDP60299.1
Two-component system, OmpR family, sensor kinase.
 0.978
SDO88576.1
PAS domain S-box-containing protein.
 
 0.971
SDO81418.1
Histidine kinase-like ATPase domain-containing protein.
  
 0.861
SDP42955.1
Two-component system, OmpR family, sensor kinase.
 0.860
SDP45282.1
Two-component system, OmpR family, sensor histidine kinase SenX3.
 0.838
SDP01499.1
Signal transduction histidine kinase.
  0.800
SDP33827.1
Signal transduction histidine kinase.
 
   0.799
Your Current Organism:
Phycicoccus dokdonensis
NCBI taxonomy Id: 443156
Other names: CCUG 54521, DSM 22329, KCTC 19248, P. dokdonensis, Phycicoccus dokdonensis Yoon et al. 2008, strain DS-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.