STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP60715.1Hypothetical protein. (206 aa)    
Predicted Functional Partners:
rplF
LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.833
SDP60762.1
Protein of unknown function; Manually curated.
       0.807
SDO57372.1
Cytochrome P450.
    
  0.782
SDP69518.1
Hypothetical protein; Belongs to the cytochrome P450 family.
    
  0.782
SDP60739.1
Hypothetical protein.
       0.773
SDP22023.1
Long-chain acyl-CoA synthetase.
    
  0.724
SDP47072.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
    
  0.724
SDP63914.1
fatty-acyl-CoA synthase.
    
  0.724
SDP68740.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
    
  0.724
SDP71608.1
O-succinylbenzoic acid--CoA ligase.
    
  0.724
Your Current Organism:
Phycicoccus dokdonensis
NCBI taxonomy Id: 443156
Other names: CCUG 54521, DSM 22329, KCTC 19248, P. dokdonensis, Phycicoccus dokdonensis Yoon et al. 2008, strain DS-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.