Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDO96867.1 | whiB-6 | SAMN04489867_1058 | SAMN04489867_3225 | Putative RecB family exonuclease. | WhiB family transcriptional regulator, redox-sensing transcriptional regulator; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.530 |
SDP63401.1 | leuS | SAMN04489867_3226 | SAMN04489867_0553 | Signal transduction histidine kinase. | leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.699 |
SDP63401.1 | sigA | SAMN04489867_3226 | SAMN04489867_0627 | Signal transduction histidine kinase. | RNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.869 |
SDP63401.1 | whiB-6 | SAMN04489867_3226 | SAMN04489867_3225 | Signal transduction histidine kinase. | WhiB family transcriptional regulator, redox-sensing transcriptional regulator; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.544 |
leuS | SDP63401.1 | SAMN04489867_0553 | SAMN04489867_3226 | leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | Signal transduction histidine kinase. | 0.699 |
leuS | whiB-6 | SAMN04489867_0553 | SAMN04489867_3225 | leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | WhiB family transcriptional regulator, redox-sensing transcriptional regulator; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.412 |
sigA | SDP63401.1 | SAMN04489867_0627 | SAMN04489867_3226 | RNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | Signal transduction histidine kinase. | 0.869 |
sigA | whiB-6 | SAMN04489867_0627 | SAMN04489867_3225 | RNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | WhiB family transcriptional regulator, redox-sensing transcriptional regulator; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.736 |
whiB-6 | SDO96867.1 | SAMN04489867_3225 | SAMN04489867_1058 | WhiB family transcriptional regulator, redox-sensing transcriptional regulator; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | Putative RecB family exonuclease. | 0.530 |
whiB-6 | SDP63401.1 | SAMN04489867_3225 | SAMN04489867_3226 | WhiB family transcriptional regulator, redox-sensing transcriptional regulator; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | Signal transduction histidine kinase. | 0.544 |
whiB-6 | leuS | SAMN04489867_3225 | SAMN04489867_0553 | WhiB family transcriptional regulator, redox-sensing transcriptional regulator; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.412 |
whiB-6 | sigA | SAMN04489867_3225 | SAMN04489867_0627 | WhiB family transcriptional regulator, redox-sensing transcriptional regulator; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | RNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.736 |