STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP64846.1Hypothetical protein. (307 aa)    
Predicted Functional Partners:
SDP64864.1
propionyl-CoA synthetase.
 
     0.802
SDO64958.1
Malate dehydrogenase (oxaloacetate-decarboxylating).
  
  
 0.716
SDP21090.1
Malate dehydrogenase (oxaloacetate-decarboxylating).
  
  
 0.716
SDP66692.1
Malate dehydrogenase (oxaloacetate-decarboxylating).
  
  
 0.716
SDP64889.1
Hypothetical protein.
       0.608
SDP04060.1
Uncharacterized membrane protein YgaE, UPF0421/DUF939 family.
  
     0.520
SDP34114.1
Signal transduction histidine kinase.
  
     0.424
Your Current Organism:
Phycicoccus dokdonensis
NCBI taxonomy Id: 443156
Other names: CCUG 54521, DSM 22329, KCTC 19248, P. dokdonensis, Phycicoccus dokdonensis Yoon et al. 2008, strain DS-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.