STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP65818.1AraC-type DNA-binding protein. (388 aa)    
Predicted Functional Partners:
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.780
SDP52756.1
Transcriptional regulator, GntR family.
   
  
 0.776
SDP02583.1
Glutamate synthase (NADH) large subunit.
    
  0.723
SDP72526.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
     
 0.692
SDP65843.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family.
 
     0.652
SDP06139.1
AraC-type DNA-binding protein.
  
     0.651
SDO88576.1
PAS domain S-box-containing protein.
     
 0.560
SDP65799.1
TIGR03083 family protein.
       0.509
SDP65865.1
Sorbitol/mannitol transport system permease protein.
 
     0.505
SDP65886.1
Sorbitol/mannitol transport system permease protein.
 
     0.502
Your Current Organism:
Phycicoccus dokdonensis
NCBI taxonomy Id: 443156
Other names: CCUG 54521, DSM 22329, KCTC 19248, P. dokdonensis, Phycicoccus dokdonensis Yoon et al. 2008, strain DS-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.