STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RTN4Reticulon. (996 aa)    
Predicted Functional Partners:
OMG
LRRNT domain-containing protein.
    
 0.667
LINGO1
Ig-like domain-containing protein.
   
 0.632
VTA1
Vesicle trafficking 1.
    
   0.559
GCH1
GTP_cyclohydroI domain-containing protein.
    
   0.559
SEC63
SEC63 homolog, protein translocation regulator.
    
 
 0.544
RTN4R
Uncharacterized protein.
    
 0.539
CASP8AP2
Uncharacterized protein.
  
     0.445
DV515_00016359
Receptor expression-enhancing protein.
    
 
 0.434
ENSEGOP00005018300
annotation not available
    
 
 0.434
Your Current Organism:
Erythrura gouldiae
NCBI taxonomy Id: 44316
Other names: Chloebia gouldiae, Chloebia gouldiae gouldiae, E. gouldiae, Gouldian finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.