STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DV515_00006412Treslin_N domain-containing protein. (926 aa)    
Predicted Functional Partners:
TOPBP1
Uncharacterized protein.
    
 
 0.869
TBL3
WD_REPEATS_REGION domain-containing protein.
   
 
 0.744
CDC45
Uncharacterized protein.
   
  
 0.740
WDR36
WD_REPEATS_REGION domain-containing protein.
   
 
 0.715
DV515_00003550
WD_REPEATS_REGION domain-containing protein.
   
 
 0.705
UTP4
Uncharacterized protein.
   
 
 0.697
UTP15
WD_REPEATS_REGION domain-containing protein.
   
 
 0.694
EXO1
Exonuclease 1.
  
 
 0.692
MTBP
Uncharacterized protein.
   
 0.690
NAT10
RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein THUMPD1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.
   
   0.688
Your Current Organism:
Erythrura gouldiae
NCBI taxonomy Id: 44316
Other names: Chloebia gouldiae, Chloebia gouldiae gouldiae, E. gouldiae, Gouldian finch
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