EIF4B protein (Erythrura gouldiae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EIF4B

Uncharacterized protein. (512 aa)

Predicted Functional Partners:

EIF4A2

0.974

DV515_00012135

0.907

RPS6KB2

0.902

DV515_00003622

0.882

EIF3B

0.867

EIF4E

0.850

EIF2S1

0.845

EIF3A

0.844

EIF4E1B

0.844

PAIP1

0.837

Your Current Organism:

Erythrura gouldiae

NCBI taxonomy Id: 44316
Other names: Chloebia gouldiae, Chloebia gouldiae gouldiae, E. gouldiae, Gouldian finch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DV515_00003622	EIF2S1	ENSEGOP00005009139	ENSEGOP00005001210	Tr-type G domain-containing protein.	S1 motif domain-containing protein.	0.999
DV515_00003622	EIF3A	ENSEGOP00005009139	ENSEGOP00005004921	Tr-type G domain-containing protein.	Eukaryotic translation initiation factor 3 subunit A; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	0.997
DV515_00003622	EIF3B	ENSEGOP00005009139	ENSEGOP00005008451	Tr-type G domain-containing protein.	Eukaryotic translation initiation factor 3 subunit B.	0.998
DV515_00003622	EIF4A2	ENSEGOP00005009139	ENSEGOP00005006454	Tr-type G domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.856
DV515_00003622	EIF4B	ENSEGOP00005009139	ENSEGOP00005010003	Tr-type G domain-containing protein.	Uncharacterized protein.	0.882
DV515_00003622	EIF4E	ENSEGOP00005009139	ENSEGOP00005005265	Tr-type G domain-containing protein.	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.614
DV515_00003622	EIF4E1B	ENSEGOP00005009139	ENSEGOP00005007372	Tr-type G domain-containing protein.	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.614
DV515_00003622	PAIP1	ENSEGOP00005009139	ENSEGOP00005004566	Tr-type G domain-containing protein.	MIF4G domain-containing protein.	0.634
DV515_00012135	EIF4B	ENSEGOP00005020076	ENSEGOP00005010003	Ribosomal protein S6 kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. S6 kinase subfamily.	Uncharacterized protein.	0.907
DV515_00012135	PAIP1	ENSEGOP00005020076	ENSEGOP00005004566	Ribosomal protein S6 kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. S6 kinase subfamily.	MIF4G domain-containing protein.	0.594
DV515_00012135	RPS6KB2	ENSEGOP00005020076	ENSEGOP00005019164	Ribosomal protein S6 kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. S6 kinase subfamily.	Ribosomal protein S6 kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. S6 kinase subfamily.	0.878
EIF2S1	DV515_00003622	ENSEGOP00005001210	ENSEGOP00005009139	S1 motif domain-containing protein.	Tr-type G domain-containing protein.	0.999
EIF2S1	EIF3A	ENSEGOP00005001210	ENSEGOP00005004921	S1 motif domain-containing protein.	Eukaryotic translation initiation factor 3 subunit A; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	0.999
EIF2S1	EIF3B	ENSEGOP00005001210	ENSEGOP00005008451	S1 motif domain-containing protein.	Eukaryotic translation initiation factor 3 subunit B.	0.998
EIF2S1	EIF4A2	ENSEGOP00005001210	ENSEGOP00005006454	S1 motif domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.946
EIF2S1	EIF4B	ENSEGOP00005001210	ENSEGOP00005010003	S1 motif domain-containing protein.	Uncharacterized protein.	0.845
EIF2S1	EIF4E	ENSEGOP00005001210	ENSEGOP00005005265	S1 motif domain-containing protein.	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.750
EIF2S1	EIF4E1B	ENSEGOP00005001210	ENSEGOP00005007372	S1 motif domain-containing protein.	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.750
EIF2S1	PAIP1	ENSEGOP00005001210	ENSEGOP00005004566	S1 motif domain-containing protein.	MIF4G domain-containing protein.	0.733
EIF3A	DV515_00003622	ENSEGOP00005004921	ENSEGOP00005009139	Eukaryotic translation initiation factor 3 subunit A; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	Tr-type G domain-containing protein.	0.997