OCRL protein (Erythrura gouldiae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

OCRL

Rho-GAP domain-containing protein. (1049 aa)

Predicted Functional Partners:

SACM1L

0.971

INPP4B

0.960

PI4KA

0.959

PIK3C2A

0.958

PIP5K1B

0.958

PIP5K1C

0.958

PI4K2B

0.956

PIP4K2A

0.956

PTEN

0.956

DV515_00017615

0.955

Your Current Organism:

Erythrura gouldiae

NCBI taxonomy Id: 44316
Other names: Chloebia gouldiae, Chloebia gouldiae gouldiae, E. gouldiae, Gouldian finch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DV515_00017615	OCRL	ENSEGOP00005012767	ENSEGOP00005017176	PI3K/PI4K domain-containing protein.	Rho-GAP domain-containing protein.	0.955
DV515_00017615	PI4K2B	ENSEGOP00005012767	ENSEGOP00005007021	PI3K/PI4K domain-containing protein.	PI3K/PI4K domain-containing protein.	0.953
DV515_00017615	PI4KA	ENSEGOP00005012767	ENSEGOP00005005692	PI3K/PI4K domain-containing protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.975
DV515_00017615	PIK3C2A	ENSEGOP00005012767	ENSEGOP00005004091	PI3K/PI4K domain-containing protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.954
DV515_00017615	PIP4K2A	ENSEGOP00005012767	ENSEGOP00005007659	PI3K/PI4K domain-containing protein.	PIPK domain-containing protein.	0.403
DV515_00017615	PIP5K1B	ENSEGOP00005012767	ENSEGOP00005008996	PI3K/PI4K domain-containing protein.	PIPK domain-containing protein.	0.960
DV515_00017615	PIP5K1C	ENSEGOP00005012767	ENSEGOP00005011013	PI3K/PI4K domain-containing protein.	PIPK domain-containing protein.	0.960
DV515_00017615	PTEN	ENSEGOP00005012767	ENSEGOP00005021934	PI3K/PI4K domain-containing protein.	Phosphatase and tensin homolog; Tumor suppressor. Acts as a dual-specificity protein phosphatase, dephosphorylating tyrosine-, serine- and threonine- phosphorylated proteins. Also acts as a lipid phosphatase. Belongs to the PTEN phosphatase protein family.	0.952
DV515_00017615	SACM1L	ENSEGOP00005012767	ENSEGOP00005003523	PI3K/PI4K domain-containing protein.	SAC domain-containing protein.	0.964
INPP4B	OCRL	ENSEGOP00005023359	ENSEGOP00005017176	Uncharacterized protein.	Rho-GAP domain-containing protein.	0.960
INPP4B	PIK3C2A	ENSEGOP00005023359	ENSEGOP00005004091	Uncharacterized protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.958
INPP4B	PTEN	ENSEGOP00005023359	ENSEGOP00005021934	Uncharacterized protein.	Phosphatase and tensin homolog; Tumor suppressor. Acts as a dual-specificity protein phosphatase, dephosphorylating tyrosine-, serine- and threonine- phosphorylated proteins. Also acts as a lipid phosphatase. Belongs to the PTEN phosphatase protein family.	0.961
OCRL	DV515_00017615	ENSEGOP00005017176	ENSEGOP00005012767	Rho-GAP domain-containing protein.	PI3K/PI4K domain-containing protein.	0.955
OCRL	INPP4B	ENSEGOP00005017176	ENSEGOP00005023359	Rho-GAP domain-containing protein.	Uncharacterized protein.	0.960
OCRL	PI4K2B	ENSEGOP00005017176	ENSEGOP00005007021	Rho-GAP domain-containing protein.	PI3K/PI4K domain-containing protein.	0.956
OCRL	PI4KA	ENSEGOP00005017176	ENSEGOP00005005692	Rho-GAP domain-containing protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.959
OCRL	PIK3C2A	ENSEGOP00005017176	ENSEGOP00005004091	Rho-GAP domain-containing protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.958
OCRL	PIP4K2A	ENSEGOP00005017176	ENSEGOP00005007659	Rho-GAP domain-containing protein.	PIPK domain-containing protein.	0.956
OCRL	PIP5K1B	ENSEGOP00005017176	ENSEGOP00005008996	Rho-GAP domain-containing protein.	PIPK domain-containing protein.	0.958
OCRL	PIP5K1C	ENSEGOP00005017176	ENSEGOP00005011013	Rho-GAP domain-containing protein.	PIPK domain-containing protein.	0.958