LRRTM3 protein (Erythrura gouldiae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LRRTM3

Uncharacterized protein. (528 aa)

Predicted Functional Partners:

ADGRL2

0.748

ADGRL3

0.742

ENSEGOP00005021913

0.739

GPC1

0.559

NXPH1

0.547

NTNG1

0.542

ARHGAP26

0.525

DV515_00002057

0.459

ENSEGOP00005000749

0.446

ENSEGOP00005010335

0.446

Your Current Organism:

Erythrura gouldiae

NCBI taxonomy Id: 44316
Other names: Chloebia gouldiae, Chloebia gouldiae gouldiae, E. gouldiae, Gouldian finch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ADGRL2	LRRTM3	ENSEGOP00005004938	ENSEGOP00005019125	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	Uncharacterized protein.	0.748
ADGRL3	LRRTM3	ENSEGOP00005005416	ENSEGOP00005019125	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	Uncharacterized protein.	0.742
ARHGAP26	LRRTM3	ENSEGOP00005006809	ENSEGOP00005019125	Uncharacterized protein.	Uncharacterized protein.	0.525
ARHGAP26	NXPH1	ENSEGOP00005006809	ENSEGOP00005003118	Uncharacterized protein.	Neurexophilin 1.	0.515
DV515_00002057	ENSEGOP00005000749	ENSEGOP00005000746	ENSEGOP00005000749	Uncharacterized protein.	annotation not available	0.846
DV515_00002057	ENSEGOP00005010335	ENSEGOP00005000746	ENSEGOP00005010335	Uncharacterized protein.	annotation not available	0.621
DV515_00002057	LRRTM3	ENSEGOP00005000746	ENSEGOP00005019125	Uncharacterized protein.	Uncharacterized protein.	0.459
DV515_00002057	NXPH1	ENSEGOP00005000746	ENSEGOP00005003118	Uncharacterized protein.	Neurexophilin 1.	0.491
ENSEGOP00005000749	DV515_00002057	ENSEGOP00005000749	ENSEGOP00005000746	annotation not available	Uncharacterized protein.	0.846
ENSEGOP00005000749	LRRTM3	ENSEGOP00005000749	ENSEGOP00005019125	annotation not available	Uncharacterized protein.	0.446
ENSEGOP00005000749	NXPH1	ENSEGOP00005000749	ENSEGOP00005003118	annotation not available	Neurexophilin 1.	0.491
ENSEGOP00005010335	DV515_00002057	ENSEGOP00005010335	ENSEGOP00005000746	annotation not available	Uncharacterized protein.	0.621
ENSEGOP00005010335	LRRTM3	ENSEGOP00005010335	ENSEGOP00005019125	annotation not available	Uncharacterized protein.	0.446
ENSEGOP00005010335	NXPH1	ENSEGOP00005010335	ENSEGOP00005003118	annotation not available	Neurexophilin 1.	0.491
ENSEGOP00005021913	LRRTM3	ENSEGOP00005021913	ENSEGOP00005019125	annotation not available	Uncharacterized protein.	0.739
GPC1	LRRTM3	ENSEGOP00005019976	ENSEGOP00005019125	Uncharacterized protein; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.	Uncharacterized protein.	0.559
LRRTM3	ADGRL2	ENSEGOP00005019125	ENSEGOP00005004938	Uncharacterized protein.	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	0.748
LRRTM3	ADGRL3	ENSEGOP00005019125	ENSEGOP00005005416	Uncharacterized protein.	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	0.742
LRRTM3	ARHGAP26	ENSEGOP00005019125	ENSEGOP00005006809	Uncharacterized protein.	Uncharacterized protein.	0.525
LRRTM3	DV515_00002057	ENSEGOP00005019125	ENSEGOP00005000746	Uncharacterized protein.	Uncharacterized protein.	0.459