ATPAF1 protein (Erythrura gouldiae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ATPAF1

Uncharacterized protein. (303 aa)

Predicted Functional Partners:

ATPAF2

0.747

ATP5F1B

0.679

ATP5F1A

0.647

CDCA8

0.630

ATP5F1C

0.575

PALB2

0.503

ATP23

0.485

ATP5PB

0.473

ATP5F1D

0.441

MRPL27

0.436

Your Current Organism:

Erythrura gouldiae

NCBI taxonomy Id: 44316
Other names: Chloebia gouldiae, Chloebia gouldiae gouldiae, E. gouldiae, Gouldian finch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATP23	ATPAF1	ENSEGOP00005016401	ENSEGOP00005020979	Mitochondrial inner membrane protease ATP23; Belongs to the peptidase M76 family.	Uncharacterized protein.	0.485
ATP23	ATPAF2	ENSEGOP00005016401	ENSEGOP00005017347	Mitochondrial inner membrane protease ATP23; Belongs to the peptidase M76 family.	Uncharacterized protein.	0.521
ATP5F1A	ATP5F1B	ENSEGOP00005014248	ENSEGOP00005021695	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.999
ATP5F1A	ATP5F1C	ENSEGOP00005014248	ENSEGOP00005007146	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase subunit gamma.	0.999
ATP5F1A	ATP5F1D	ENSEGOP00005014248	ENSEGOP00005018894	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP-synt_DE_N domain-containing protein.	0.999
ATP5F1A	ATP5PB	ENSEGOP00005014248	ENSEGOP00005020907	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Uncharacterized protein.	0.999
ATP5F1A	ATPAF1	ENSEGOP00005014248	ENSEGOP00005020979	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Uncharacterized protein.	0.647
ATP5F1A	ATPAF2	ENSEGOP00005014248	ENSEGOP00005017347	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Uncharacterized protein.	0.751
ATP5F1A	CDCA8	ENSEGOP00005014248	ENSEGOP00005023263	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Nbl1_Borealin_N domain-containing protein.	0.994
ATP5F1A	MRPL27	ENSEGOP00005014248	ENSEGOP00005009687	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Uncharacterized protein.	0.455
ATP5F1A	PALB2	ENSEGOP00005014248	ENSEGOP00005016743	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	PALB2_WD40 domain-containing protein.	0.735
ATP5F1B	ATP5F1A	ENSEGOP00005021695	ENSEGOP00005014248	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.999
ATP5F1B	ATP5F1C	ENSEGOP00005021695	ENSEGOP00005007146	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase subunit gamma.	0.999
ATP5F1B	ATP5F1D	ENSEGOP00005021695	ENSEGOP00005018894	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP-synt_DE_N domain-containing protein.	0.999
ATP5F1B	ATP5PB	ENSEGOP00005021695	ENSEGOP00005020907	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Uncharacterized protein.	0.999
ATP5F1B	ATPAF1	ENSEGOP00005021695	ENSEGOP00005020979	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Uncharacterized protein.	0.679
ATP5F1B	ATPAF2	ENSEGOP00005021695	ENSEGOP00005017347	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Uncharacterized protein.	0.706
ATP5F1C	ATP5F1A	ENSEGOP00005007146	ENSEGOP00005014248	ATP synthase subunit gamma.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.999
ATP5F1C	ATP5F1B	ENSEGOP00005007146	ENSEGOP00005021695	ATP synthase subunit gamma.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.999
ATP5F1C	ATP5F1D	ENSEGOP00005007146	ENSEGOP00005018894	ATP synthase subunit gamma.	ATP-synt_DE_N domain-containing protein.	0.999