DV515_00018050 protein (Erythrura gouldiae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DV515_00018050

Uncharacterized protein. (598 aa)

Predicted Functional Partners:

LEO1

0.999

CDC73

0.995

SSRP1

0.992

ENSEGOP00005019927

0.990

CTR9

0.989

SUPT6H

0.986

POLR2C

0.984

POLR2B

0.980

DV515_00011984

0.975

ENSEGOP00005011139

0.969

Your Current Organism:

Erythrura gouldiae

NCBI taxonomy Id: 44316
Other names: Chloebia gouldiae, Chloebia gouldiae gouldiae, E. gouldiae, Gouldian finch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDC73	CTR9	ENSEGOP00005005629	ENSEGOP00005023441	CDC73_N domain-containing protein.	TPR_REGION domain-containing protein.	0.999
CDC73	DV515_00011984	ENSEGOP00005005629	ENSEGOP00005023630	CDC73_N domain-containing protein.	Tankyrase_bdg_C domain-containing protein.	0.956
CDC73	DV515_00018050	ENSEGOP00005005629	ENSEGOP00005022190	CDC73_N domain-containing protein.	Uncharacterized protein.	0.995
CDC73	ENSEGOP00005011139	ENSEGOP00005005629	ENSEGOP00005011139	CDC73_N domain-containing protein.	annotation not available	0.897
CDC73	ENSEGOP00005019927	ENSEGOP00005005629	ENSEGOP00005019927	CDC73_N domain-containing protein.	annotation not available	0.962
CDC73	LEO1	ENSEGOP00005005629	ENSEGOP00005023796	CDC73_N domain-containing protein.	Uncharacterized protein.	0.999
CDC73	POLR2B	ENSEGOP00005005629	ENSEGOP00005005378	CDC73_N domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.941
CDC73	POLR2C	ENSEGOP00005005629	ENSEGOP00005009221	CDC73_N domain-containing protein.	RPOLD domain-containing protein.	0.925
CDC73	SSRP1	ENSEGOP00005005629	ENSEGOP00005023633	CDC73_N domain-containing protein.	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]	0.958
CDC73	SUPT6H	ENSEGOP00005005629	ENSEGOP00005012768	CDC73_N domain-containing protein.	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family.	0.950
CTR9	CDC73	ENSEGOP00005023441	ENSEGOP00005005629	TPR_REGION domain-containing protein.	CDC73_N domain-containing protein.	0.999
CTR9	DV515_00011984	ENSEGOP00005023441	ENSEGOP00005023630	TPR_REGION domain-containing protein.	Tankyrase_bdg_C domain-containing protein.	0.963
CTR9	DV515_00018050	ENSEGOP00005023441	ENSEGOP00005022190	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.989
CTR9	ENSEGOP00005011139	ENSEGOP00005023441	ENSEGOP00005011139	TPR_REGION domain-containing protein.	annotation not available	0.886
CTR9	ENSEGOP00005019927	ENSEGOP00005023441	ENSEGOP00005019927	TPR_REGION domain-containing protein.	annotation not available	0.932
CTR9	LEO1	ENSEGOP00005023441	ENSEGOP00005023796	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.999
CTR9	POLR2B	ENSEGOP00005023441	ENSEGOP00005005378	TPR_REGION domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.949
CTR9	POLR2C	ENSEGOP00005023441	ENSEGOP00005009221	TPR_REGION domain-containing protein.	RPOLD domain-containing protein.	0.953
CTR9	SSRP1	ENSEGOP00005023441	ENSEGOP00005023633	TPR_REGION domain-containing protein.	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]	0.963
CTR9	SUPT6H	ENSEGOP00005023441	ENSEGOP00005012768	TPR_REGION domain-containing protein.	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family.	0.968