DDX55 protein (Erythrura gouldiae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DDX55

RNA helicase. (597 aa)

Predicted Functional Partners:

FTSJ3

0.984

WDR12

0.973

CEP152

0.969

GTPBP4

0.961

EBNA1BP2

0.958

NOC3L

0.955

RSL24D1

0.952

NIFK

0.949

GNL3

0.947

RSL1D1

0.947

Your Current Organism:

Erythrura gouldiae

NCBI taxonomy Id: 44316
Other names: Chloebia gouldiae, Chloebia gouldiae gouldiae, E. gouldiae, Gouldian finch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CEP152	DDX55	ENSEGOP00005023821	ENSEGOP00005022495	Uncharacterized protein.	RNA helicase.	0.969
CEP152	EBNA1BP2	ENSEGOP00005023821	ENSEGOP00005021706	Uncharacterized protein.	Uncharacterized protein.	0.995
CEP152	FTSJ3	ENSEGOP00005023821	ENSEGOP00005020352	Uncharacterized protein.	pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.	0.994
CEP152	GNL3	ENSEGOP00005023821	ENSEGOP00005007780	Uncharacterized protein.	CP-type G domain-containing protein.	0.999
CEP152	GTPBP4	ENSEGOP00005023821	ENSEGOP00005005841	Uncharacterized protein.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.996
CEP152	NIFK	ENSEGOP00005023821	ENSEGOP00005006649	Uncharacterized protein.	RRM domain-containing protein.	0.985
CEP152	NOC3L	ENSEGOP00005023821	ENSEGOP00005011790	Uncharacterized protein.	Nucleolar complex protein 3 homolog.	0.995
CEP152	RSL1D1	ENSEGOP00005023821	ENSEGOP00005008668	Uncharacterized protein.	Uncharacterized protein.	0.995
CEP152	RSL24D1	ENSEGOP00005023821	ENSEGOP00005023763	Uncharacterized protein.	TRASH domain-containing protein.	0.985
CEP152	WDR12	ENSEGOP00005023821	ENSEGOP00005013716	Uncharacterized protein.	Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.999
DDX55	CEP152	ENSEGOP00005022495	ENSEGOP00005023821	RNA helicase.	Uncharacterized protein.	0.969
DDX55	EBNA1BP2	ENSEGOP00005022495	ENSEGOP00005021706	RNA helicase.	Uncharacterized protein.	0.958
DDX55	FTSJ3	ENSEGOP00005022495	ENSEGOP00005020352	RNA helicase.	pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.	0.984
DDX55	GNL3	ENSEGOP00005022495	ENSEGOP00005007780	RNA helicase.	CP-type G domain-containing protein.	0.947
DDX55	GTPBP4	ENSEGOP00005022495	ENSEGOP00005005841	RNA helicase.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.961
DDX55	NIFK	ENSEGOP00005022495	ENSEGOP00005006649	RNA helicase.	RRM domain-containing protein.	0.949
DDX55	NOC3L	ENSEGOP00005022495	ENSEGOP00005011790	RNA helicase.	Nucleolar complex protein 3 homolog.	0.955
DDX55	RSL1D1	ENSEGOP00005022495	ENSEGOP00005008668	RNA helicase.	Uncharacterized protein.	0.947
DDX55	RSL24D1	ENSEGOP00005022495	ENSEGOP00005023763	RNA helicase.	TRASH domain-containing protein.	0.952
DDX55	WDR12	ENSEGOP00005022495	ENSEGOP00005013716	RNA helicase.	Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.973