STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104585600Nuclear pore complex protein NUP98A-like isoform X1. (990 aa)    
Predicted Functional Partners:
LOC104600042
Protein RAE1.
   
 0.994
LOC104600326
Protein SEH1-like isoform X1; Belongs to the WD repeat SEC13 family.
   
 0.986
LOC104603966
Protein SEH1-like isoform X1; Belongs to the WD repeat SEC13 family.
   
 0.986
LOC104592079
Protein transport protein SEC13 homolog B-like; Belongs to the WD repeat SEC13 family.
    
 0.982
LOC104604510
Protein transport protein SEC13 homolog B-like; Belongs to the WD repeat SEC13 family.
    
 0.982
LOC104607985
Protein transport protein SEC13 homolog B; Belongs to the WD repeat SEC13 family.
    
 0.982
LOC104592915
Nuclear pore complex protein NUP54.
  
 0.963
LOC104613434
Nuclear pore protein.
   
 0.952
LOC104592427
Nuclear pore complex protein NUP205.
   
 0.949
LOC104607410
Nuclear pore complex protein NUP155.
   
 0.949
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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