STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104586365SKP1-like protein 21 isoform X1; Belongs to the SKP1 family. (366 aa)    
Predicted Functional Partners:
LOC104600540
RING-box protein 1a.
   
 0.846
LOC104590657
F-box protein 7.
    
 0.826
LOC104607638
ubiquitin-60S ribosomal protein L40.
    
  0.770
LOC104599151
COP9 signalosome complex subunit 5b-like.
   
 0.767
LOC104611909
F-box protein SKIP17-like.
    
 0.765
rpl2
Ribosomal protein L2.
   
 0.716
LOC104590354
Protein SGT1 homolog A.
   
 
 0.690
LOC104600236
Protein SGT1 homolog.
   
 
 0.690
LOC104586197
Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.
    
 0.653
LOC104604585
Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.
    
 0.653
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.