STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104585574Chromatin structure-remodeling complex protein BSH. (240 aa)    
Predicted Functional Partners:
LOC104599561
Actin-related protein 4; Belongs to the actin family.
   
 0.972
LOC104609580
Armadillo repeat-containing protein LFR-like.
    
 0.953
LOC104588404
SWI/SNF complex component SNF12 homolog.
   
 0.948
LOC104592908
SWI/SNF complex component SNF12 homolog.
   
 0.948
LOC104592824
SWI/SNF complex subunit SWI3A isoform X1.
   
 0.900
LOC104606859
SWI/SNF complex subunit SWI3B.
   
 0.900
LOC104595723
SWI/SNF complex subunit SWI3D isoform X1.
   
 0.898
LOC104600836
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.886
LOC104586000
High mobility group B protein 15-like.
   
 
 0.876
LOC104594344
High mobility group B protein 10.
   
 
 0.876
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.