STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104585665Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic isoform X1. (527 aa)    
Predicted Functional Partners:
LOC104600011
Shikimate kinase, chloroplastic isoform X1.
  
 
 0.972
LOC104606748
3-dehydroquinate synthase, chloroplastic-like.
 
 
 
 0.971
LOC104599575
3-dehydroquinate synthase, chloroplastic-like isoform X1.
 
 
 
 0.970
LOC104588429
Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like.
  
  
 
0.901
LOC104602250
3-phosphoshikimate 1-carboxyvinyltransferase; Belongs to the EPSP synthase family.
 
  
 0.891
LOC104602632
Chorismate synthase.
  
 
 0.790
LOC104603298
Chorismate mutase.
  
 
 0.760
LOC104595633
Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.
  
 
 0.721
LOC104598462
Chorismate mutase.
  
 
 0.687
LOC104598032
Chorismate mutase.
  
 
 0.687
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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