STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104587135Non-canonical poly(A) RNA polymerase PAPD5. (541 aa)    
Predicted Functional Partners:
LOC104610841
DExH-box ATP-dependent RNA helicase DExH9 isoform X1.
   
 
 0.746
LOC104593867
DExH-box ATP-dependent RNA helicase DExH10.
   
 
 0.676
LOC109113946
Uncharacterized protein At1g27050.
    
 
 0.638
LOC104602344
Uncharacterized protein LOC104602344 isoform X1.
     
0.571
LOC104602862
Exportin-4 isoform X1.
      
 0.569
LOC104587716
Protein RRP6-like 2.
   
 
 0.540
LOC104610942
Protein RRP6-like 3 isoform X1.
   
 
 0.540
LOC104599094
Xylose isomerase.
      
 0.512
LOC104587892
Transmembrane emp24 domain-containing protein p24beta2-like.
      
 0.499
LOC104594268
Transmembrane emp24 domain-containing protein p24beta2.
      
 0.499
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.