STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104588364Cysteine desulfurase 1, chloroplastic. (469 aa)    
Predicted Functional Partners:
LOC104612819
UPF0051 protein ABCI8, chloroplastic.
 
 0.960
LOC104587233
Iron-sulfur cluster assembly protein; Scaffold protein for the de novo synthesis of iron-sulfur (Fe-S) clusters within mitochondria, which is required for maturation of both mitochondrial and cytoplasmic [2Fe-2S] and [4Fe-4S] proteins.
  
 0.958
LOC104593177
Iron-sulfur cluster assembly protein; Scaffold protein for the de novo synthesis of iron-sulfur (Fe-S) clusters within mitochondria, which is required for maturation of both mitochondrial and cytoplasmic [2Fe-2S] and [4Fe-4S] proteins.
  
 0.958
LOC104594628
Frataxin, mitochondrial.
   
 0.945
LOC104613402
Thioredoxin reductase.
  
 
 0.928
LOC104598107
Cystathionine gamma-synthase 1, chloroplastic.
  
 
 0.922
LOC104603829
Thioredoxin reductase.
  
 
 0.919
LOC104606866
Thioredoxin reductase.
  
 
 0.919
LOC104593738
ABC transporter I family member 6, chloroplastic.
 
 
 
 0.895
LOC104597996
LYR motif-containing protein 4; Belongs to the complex I LYR family.
   
 0.872
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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