STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104588626Prolycopene isomerase, chloroplastic. (578 aa)    
Predicted Functional Partners:
LOC104602940
Geranylgeranyl diphosphate reductase, chloroplastic.
 
 
 0.895
LOC104602023
Squalene synthase-like.
  
 
 0.854
LOC104606975
LOW QUALITY PROTEIN: phytoene synthase 2, chloroplastic.
  
 
 0.854
LOC104608100
Phytoene synthase 2, chloroplastic-like.
  
 
 0.854
LOC104606175
NADH dehydrogenase (Ubiquinone) complex I, assembly factor 6.
  
 
 0.842
LOC104596524
Zeta-carotene desaturase; Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'.
  
  
 0.716
LOC104603366
Homogentisate geranylgeranyltransferase, chloroplastic-like.
 
 
 0.686
LOC104603204
Homogentisate phytyltransferase 1, chloroplastic-like isoform X1.
 
 
 0.651
LOC104585878
Magnesium-chelatase subunit ChlH, chloroplastic.
 
  
 0.647
LOC104589963
Magnesium-chelatase subunit ChlH, chloroplastic.
 
  
 0.647
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.