STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104589231Uncharacterized protein LOC104589231 isoform X1. (282 aa)    
Predicted Functional Partners:
LOC104600836
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.624
LOC104603736
pre-rRNA-processing protein TSR1 homolog isoform X1.
   
  0.566
LOC104599767
Bystin.
   
 0.555
LOC104595184
RNA-binding protein pno1-like.
   
  0.526
LOC104602038
Protein LTV1 homolog.
   
 0.521
LOC104586154
Multifunctional methyltransferase subunit TRM112-like protein At1g22270.
   
 0.466
LOC104604922
Multifunctional methyltransferase subunit TRM112-like protein At1g22270.
   
 0.466
LOC104606495
Multifunctional methyltransferase subunit TRM112-like protein At1g22270.
   
 0.466
LOC104598979
40S ribosomal protein S21-2-like isoform X1.
    
  0.448
LOC104594378
Uncharacterized protein LOC104594378.
    
 0.438
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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