LOC104589533 protein (Nelumbo nucifera) - STRING interaction network

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second shell of interactors

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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Score

LOC104589533

IAA-amino acid hydrolase ILR1-like 3. (432 aa)

Predicted Functional Partners:

LOC104595510

0.607

LOC104605630

0.607

LOC104612564

0.607

LOC104585725

0.592

LOC104591887

0.592

LOC104592721

0.592

LOC104606136

0.592

LOC104607544

0.592

LOC104611678

0.592

LOC104613191

0.592

Your Current Organism:

Nelumbo nucifera

NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC104585725	LOC104589533	A0A1U7YQ53	A0A1U7Z265	Indole-3-acetic acid-amido synthetase GH3.6.	IAA-amino acid hydrolase ILR1-like 3.	0.592
LOC104589533	LOC104585725	A0A1U7Z265	A0A1U7YQ53	IAA-amino acid hydrolase ILR1-like 3.	Indole-3-acetic acid-amido synthetase GH3.6.	0.592
LOC104589533	LOC104591887	A0A1U7Z265	A0A1U7ZDD9	IAA-amino acid hydrolase ILR1-like 3.	Indole-3-acetic acid-amido synthetase GH3.17.	0.592
LOC104589533	LOC104592721	A0A1U7Z265	A0A1U7ZQM8	IAA-amino acid hydrolase ILR1-like 3.	Indole-3-acetic acid-amido synthetase GH3.17-like.	0.592
LOC104589533	LOC104595510	A0A1U7Z265	A0A1U7ZKK8	IAA-amino acid hydrolase ILR1-like 3.	Jasmonic acid-amido synthetase JAR1-like.	0.607
LOC104589533	LOC104605630	A0A1U7Z265	A0A1U8AR22	IAA-amino acid hydrolase ILR1-like 3.	Jasmonic acid-amido synthetase JAR1-like.	0.607
LOC104589533	LOC104606136	A0A1U7Z265	A0A1U8APG4	IAA-amino acid hydrolase ILR1-like 3.	Putative indole-3-acetic acid-amido synthetase GH3.9 isoform X1.	0.592
LOC104589533	LOC104607544	A0A1U7Z265	A0A1U8AUC3	IAA-amino acid hydrolase ILR1-like 3.	Probable indole-3-acetic acid-amido synthetase GH3.1.	0.592
LOC104589533	LOC104611678	A0A1U7Z265	A0A1U8BBI9	IAA-amino acid hydrolase ILR1-like 3.	Probable indole-3-acetic acid-amido synthetase GH3.1.	0.592
LOC104589533	LOC104612564	A0A1U7Z265	A0A1U8BLW1	IAA-amino acid hydrolase ILR1-like 3.	Jasmonic acid-amido synthetase JAR1-like.	0.607
LOC104589533	LOC104613191	A0A1U7Z265	A0A1U8BCV7	IAA-amino acid hydrolase ILR1-like 3.	Probable indole-3-acetic acid-amido synthetase GH3.6.	0.592
LOC104591887	LOC104589533	A0A1U7ZDD9	A0A1U7Z265	Indole-3-acetic acid-amido synthetase GH3.17.	IAA-amino acid hydrolase ILR1-like 3.	0.592
LOC104592721	LOC104589533	A0A1U7ZQM8	A0A1U7Z265	Indole-3-acetic acid-amido synthetase GH3.17-like.	IAA-amino acid hydrolase ILR1-like 3.	0.592
LOC104595510	LOC104589533	A0A1U7ZKK8	A0A1U7Z265	Jasmonic acid-amido synthetase JAR1-like.	IAA-amino acid hydrolase ILR1-like 3.	0.607
LOC104605630	LOC104589533	A0A1U8AR22	A0A1U7Z265	Jasmonic acid-amido synthetase JAR1-like.	IAA-amino acid hydrolase ILR1-like 3.	0.607
LOC104606136	LOC104589533	A0A1U8APG4	A0A1U7Z265	Putative indole-3-acetic acid-amido synthetase GH3.9 isoform X1.	IAA-amino acid hydrolase ILR1-like 3.	0.592
LOC104607544	LOC104589533	A0A1U8AUC3	A0A1U7Z265	Probable indole-3-acetic acid-amido synthetase GH3.1.	IAA-amino acid hydrolase ILR1-like 3.	0.592
LOC104611678	LOC104589533	A0A1U8BBI9	A0A1U7Z265	Probable indole-3-acetic acid-amido synthetase GH3.1.	IAA-amino acid hydrolase ILR1-like 3.	0.592
LOC104612564	LOC104589533	A0A1U8BLW1	A0A1U7Z265	Jasmonic acid-amido synthetase JAR1-like.	IAA-amino acid hydrolase ILR1-like 3.	0.607
LOC104613191	LOC104589533	A0A1U8BCV7	A0A1U7Z265	Probable indole-3-acetic acid-amido synthetase GH3.6.	IAA-amino acid hydrolase ILR1-like 3.	0.592

Network Stats

number of nodes:

11

number of edges:

15

average node degree:

2.73

avg. local clustering coefficient:

0.889

expected number of edges:

13

PPI enrichment p-value:

0.31

your network does not have significantly more
interactions than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0034198

Cellular response to amino acid starvation

8 of 20

2.75

8.5

1.91e-17

GO:1903432

Regulation of TORC1 signaling

9 of 41

2.49

8.11

6.04e-18

GO:0031669

Cellular response to nutrient levels

9 of 101

2.09

5.9

2.22e-15

GO:0051445

Regulation of meiotic cell cycle

5 of 16

2.64

4.85

5.00e-10

GO:0010508

Positive regulation of autophagy

6 of 52

2.21

4.4

4.14e-10

(more ...)

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0035859

Seh1-associated complex

8 of 8

3.14

10.42

3.00e-20

GO:0061700

GATOR2 complex

6 of 6

3.14

7.51

1.26e-14

GO:0044754

Autolysosome

5 of 14

2.7

5.17

1.35e-10

GO:0005764

Lysosome

8 of 119

1.97

4.75

7.66e-13

GO:0005773

Vacuole

9 of 171

1.87

4.63

6.66e-14

(more ...)

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:12613

Cellular response to amino acid starvation

9 of 13

2.98

11.08

5.12e-22

CL:12608

Regulation of TOR signaling, and TOR complex

10 of 47

2.47

9.34

2.90e-21

CL:12616

Seh1-associated complex

6 of 6

3.14

7.69

5.71e-15

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

ame04150

mTOR signaling pathway

9 of 73

2.23

7.09

1.66e-17

Reactome Pathways

pathway

description

count in network

strength

signal

false discovery rate

MAP-9639288

Amino acids regulate mTORC1

8 of 56

2.3

6.3

1.32e-14

MAP-9711097

Cellular response to starvation

8 of 61

2.26

6.2

1.32e-14

MAP-2262752

Cellular responses to stress

10 of 470

1.47

2.81

4.05e-12

MAP-8953897

Cellular responses to stimuli

10 of 478

1.46

2.79

4.05e-12

MAP-3371556

Cellular response to heat stress

3 of 81

1.71

1.06

0.0070

(more ...)

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0035859

Seh1-associated complex

7 of 8

3.09

8.62

7.54e-17

GOCC:1990130

GATOR1 complex

3 of 3

3.14

2.98

3.85e-06

GOCC:0061700

GATOR2 complex

2 of 3

2.97

1.55

0.0016

GOCC:0032991

Protein-containing complex

10 of 3072

0.66

0.55

0.00045

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0853

WD repeat

4 of 164

1.53

1.26

0.0013

Protein Domains (SMART)

domain

description

count in network

strength

signal

false discovery rate

SM00320

WD40 repeats

5 of 196

1.55

1.65

8.83e-05

Enrichment display settings

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