STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104588595COBW domain-containing protein 1-like isoform X1. (448 aa)    
Predicted Functional Partners:
LOC104600524
40S ribosomal protein S29.
  
 
 0.692
rps14
30S ribosomal protein S14, chloroplastic; Binds 16S rRNA, required for the assembly of 30S particles.
  
 
 0.689
LOC104586440
50S ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family.
  
  
 0.633
LOC104600937
50S ribosomal protein L28, chloroplastic.
  
  
 0.622
LOC104599128
54S ribosomal protein L24, mitochondrial isoform X1.
  
  
 0.622
LOC104588415
Uncharacterized protein LOC104588415.
  
  
 0.568
LOC104613447
Uncharacterized protein LOC104613447.
  
  
 0.568
LOC104585878
Magnesium-chelatase subunit ChlH, chloroplastic.
  
  
 0.553
LOC104589963
Magnesium-chelatase subunit ChlH, chloroplastic.
  
  
 0.553
LOC104602782
Histidine biosynthesis bifunctional protein hisIE, chloroplastic-like isoform X1.
     
 0.514
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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