STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104589764Probable DNA-directed RNA polymerase I subunit RPA43 isoform X1. (236 aa)    
Predicted Functional Partners:
LOC104591261
DNA-directed RNA polymerases I and III subunit RPAC1 isoform X1.
   
 0.997
LOC104609240
DNA-directed RNA polymerase I subunit rpa49.
   
 0.997
LOC104612457
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.996
LOC104602122
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
   
 0.995
LOC104601162
DNA-directed RNA polymerases I and III subunit RPAC2.
   
 0.993
LOC104589742
DNA-directed RNA polymerases II and V subunit 6B-like isoform X1.
   
 0.992
LOC104605253
DNA-directed RNA polymerases II and V subunit 8A-like; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.
   
 0.992
LOC104586911
DNA-directed RNA polymerases I, II, and III subunit RPABC5.
   
 0.990
LOC104593642
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.987
LOC104609471
DNA-directed RNA polymerases II and IV subunit 5A.
   
 0.987
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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