LOC104586246 protein (Nelumbo nucifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC104586246

Uncharacterized protein LOC104586246. (280 aa)

Predicted Functional Partners:

LOC104590553

0.975

LOC104605419

0.972

LOC104608225

0.969

LOC104609104

0.968

LOC104605100

0.967

LOC104604135

0.966

LOC104601530

0.964

LOC104594085

0.959

LOC104600203

0.958

rps14

0.955

Your Current Organism:

Nelumbo nucifera

NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC104586246	LOC104590553	A0A1U7Z372	A0A1U7Z5I3	Uncharacterized protein LOC104586246.	50S ribosomal protein L3-2, chloroplastic; Belongs to the universal ribosomal protein uL3 family.	0.975
LOC104586246	LOC104594085	A0A1U7Z372	A0A1U7ZLC0	Uncharacterized protein LOC104586246.	Uncharacterized protein LOC104594085 isoform X1.	0.959
LOC104586246	LOC104600203	A0A1U7Z372	A0A1U8A2S3	Uncharacterized protein LOC104586246.	50S ribosomal protein L5, chloroplastic.	0.958
LOC104586246	LOC104601530	A0A1U7Z372	A0A1U8ACM3	Uncharacterized protein LOC104586246.	50S ribosomal protein HLP, mitochondrial isoform X1; Belongs to the universal ribosomal protein uL14 family.	0.964
LOC104586246	LOC104604135	A0A1U7Z372	A0A1U8Q8S1	Uncharacterized protein LOC104586246.	Uncharacterized protein LOC104604135.	0.966
LOC104586246	LOC104605100	A0A1U7Z372	A0A1U8AK03	Uncharacterized protein LOC104586246.	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	0.967
LOC104586246	LOC104605419	A0A1U7Z372	A0A1U8AL64	Uncharacterized protein LOC104586246.	Uncharacterized protein LOC104605419.	0.972
LOC104586246	LOC104608225	A0A1U7Z372	A0A1U8B841	Uncharacterized protein LOC104586246.	50S ribosomal protein L21, mitochondrial.	0.969
LOC104586246	LOC104609104	A0A1U7Z372	A0A1U8BAX9	Uncharacterized protein LOC104586246.	Uncharacterized protein LOC104609104.	0.968
LOC104586246	rps14	A0A1U7Z372	D3WC98	Uncharacterized protein LOC104586246.	30S ribosomal protein S14, chloroplastic; Binds 16S rRNA, required for the assembly of 30S particles.	0.955
LOC104590553	LOC104586246	A0A1U7Z5I3	A0A1U7Z372	50S ribosomal protein L3-2, chloroplastic; Belongs to the universal ribosomal protein uL3 family.	Uncharacterized protein LOC104586246.	0.975
LOC104590553	LOC104594085	A0A1U7Z5I3	A0A1U7ZLC0	50S ribosomal protein L3-2, chloroplastic; Belongs to the universal ribosomal protein uL3 family.	Uncharacterized protein LOC104594085 isoform X1.	0.963
LOC104590553	LOC104600203	A0A1U7Z5I3	A0A1U8A2S3	50S ribosomal protein L3-2, chloroplastic; Belongs to the universal ribosomal protein uL3 family.	50S ribosomal protein L5, chloroplastic.	0.983
LOC104590553	LOC104601530	A0A1U7Z5I3	A0A1U8ACM3	50S ribosomal protein L3-2, chloroplastic; Belongs to the universal ribosomal protein uL3 family.	50S ribosomal protein HLP, mitochondrial isoform X1; Belongs to the universal ribosomal protein uL14 family.	0.973
LOC104590553	LOC104604135	A0A1U7Z5I3	A0A1U8Q8S1	50S ribosomal protein L3-2, chloroplastic; Belongs to the universal ribosomal protein uL3 family.	Uncharacterized protein LOC104604135.	0.944
LOC104590553	LOC104605100	A0A1U7Z5I3	A0A1U8AK03	50S ribosomal protein L3-2, chloroplastic; Belongs to the universal ribosomal protein uL3 family.	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	0.973
LOC104590553	LOC104605419	A0A1U7Z5I3	A0A1U8AL64	50S ribosomal protein L3-2, chloroplastic; Belongs to the universal ribosomal protein uL3 family.	Uncharacterized protein LOC104605419.	0.987
LOC104590553	LOC104608225	A0A1U7Z5I3	A0A1U8B841	50S ribosomal protein L3-2, chloroplastic; Belongs to the universal ribosomal protein uL3 family.	50S ribosomal protein L21, mitochondrial.	0.980
LOC104590553	LOC104609104	A0A1U7Z5I3	A0A1U8BAX9	50S ribosomal protein L3-2, chloroplastic; Belongs to the universal ribosomal protein uL3 family.	Uncharacterized protein LOC104609104.	0.975
LOC104590553	rps14	A0A1U7Z5I3	D3WC98	50S ribosomal protein L3-2, chloroplastic; Belongs to the universal ribosomal protein uL3 family.	30S ribosomal protein S14, chloroplastic; Binds 16S rRNA, required for the assembly of 30S particles.	0.982