STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104586085Tetrapyrrole-binding protein, chloroplastic. (252 aa)    
Predicted Functional Partners:
LOC104593560
Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic.
   
  
 0.661
LOC104592756
Magnesium protoporphyrin IX methyltransferase, chloroplastic.
   
  
 0.625
LOC104585878
Magnesium-chelatase subunit ChlH, chloroplastic.
   
  
 0.596
LOC104589963
Magnesium-chelatase subunit ChlH, chloroplastic.
   
  
 0.596
LOC104591883
Mg-protoporphyrin IX chelatase; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX. Belongs to the Mg-chelatase subunits D/I family.
   
  
 0.595
LOC104587818
Chlorophyllide a oxygenase, chloroplastic-like isoform X1.
   
  
 0.594
LOC104587061
Chlorophyllide a oxygenase, chloroplastic isoform X1.
   
  
 0.594
LOC104589578
Mg-protoporphyrin IX chelatase; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX. Belongs to the Mg-chelatase subunits D/I family.
      
 0.577
LOC104605189
Serine/threonine-protein kinase-like protein CR4 isoform X1.
    
 
 0.566
LOC104592431
Heme oxygenase 1, chloroplastic.
      
 0.565
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.