STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104590464dnaJ homolog subfamily C member 8-like isoform X1. (244 aa)    
Predicted Functional Partners:
LOC104604567
Splicing factor 3A subunit 2.
    
   0.604
LOC104593468
Serrate RNA effector molecule.
   
 
  0.552
LOC104588687
Uncharacterized protein LOC104588687.
   
 
 0.510
LOC104594298
Nuclear inhibitor of protein phosphatase 1-like.
   
 
 0.510
LOC104589447
Putative glycine-rich cell wall structural protein 1.
   
  0.486
LOC104585899
Uncharacterized protein LOC104585899.
   
  0.486
LOC104590867
RNA-binding protein 25 isoform X1.
   
 
  0.486
LOC104589602
RNA-binding protein 39 isoform X1.
   
  0.444
LOC104604895
Chaperone protein dnaJ 50.
      
 0.437
LOC104606446
Protoheme IX farnesyltransferase, mitochondrial.
 
      0.419
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.