STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104592857Uncharacterized protein LOC104592857. (70 aa)    
Predicted Functional Partners:
LOC104589128
E3 ubiquitin-protein ligase FANCL isoform X1.
    
 0.706
LOC104594017
DNA excision repair protein ERCC-1 isoform X1.
   
 0.670
LOC104596846
ATP-dependent DNA helicase mph1 isoform X1.
    
 0.621
LOC104598909
Fanconi anemia group I protein homolog.
   
 0.588
LOC104605335
Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.
   
 0.587
LOC104612359
Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.
   
 0.587
LOC104588420
NPL4-like protein 1 isoform X1.
    
 0.569
LOC104613489
NPL4-like protein 1.
    
 0.569
LOC104592351
GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.
   
 
 0.493
LOC104595326
GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.
   
 
 0.493
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
Server load: low (24%) [HD]