STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104593179Type 2 DNA topoisomerase 6 subunit B-like isoform X1. (473 aa)    
Predicted Functional Partners:
LOC104600220
Meiotic recombination protein SPO11-2 isoform X1.
    
 
 0.587
LOC104606617
Meiotic recombination protein SPO11-1.
    
 
 0.586
LOC104596047
Protein PAIR1 isoform X1.
      
 0.572
LOC104609213
Uncharacterized protein LOC104609213.
      
 0.569
LOC104612642
Protein PRD1 isoform X1.
      
 0.569
LOC104597285
Uncharacterized protein LOC104597285.
      
 0.562
LOC104591511
Pachytene checkpoint protein 2 homolog; Belongs to the AAA ATPase family.
      
 0.489
LOC104592907
Fidgetin-like protein 1; Belongs to the AAA ATPase family.
      
 0.489
LOC104603314
RNA polymerase II C-terminal domain phosphatase-like; This promotes the activity of RNA polymerase II.
      
 0.489
LOC104613233
Meiotic recombination protein DMC1 homolog isoform X1; Belongs to the RecA family.
      
 0.489
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.