STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104594229DNA-dependent metalloprotease WSS1 isoform X1. (377 aa)    
Predicted Functional Partners:
LOC104612770
Uncharacterized protein LOC104612770.
      
 0.564
LOC104597307
Uncharacterized protein LOC104597307.
    
 
 0.499
LOC104590197
Uncharacterized RING finger protein C548.05c-like isoform X1.
      
 0.489
LOC104590812
Rhomboid-like protein 14, mitochondrial.
      
 0.489
LOC104592156
Transcription initiation factor TFIID subunit 15.
      
 0.485
LOC104592376
TATA-binding protein-associated factor 2N-like.
      
 0.485
LOC104595158
Uncharacterized protein LOC104595158.
      
 0.485
LOC104595344
Uncharacterized RNA-binding protein C17H9.04c isoform X1.
      
 0.485
LOC104613312
Uncharacterized protein LOC104613312.
      
 0.479
LOC104599164
Metaxin; Involved in transport of proteins into the mitochondrion. Belongs to the metaxin family.
    
 
 0.470
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.