STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104596555Uncharacterized protein LOC104596555. (121 aa)    
Predicted Functional Partners:
LOC104604291
CSC1-like protein At4g35870.
      
 0.483
LOC104604583
Protein SHOOT GRAVITROPISM 6 isoform X1.
      
 0.483
LOC104599968
Uncharacterized protein LOC104599968.
   
  
 0.480
LOC104586763
Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.
      
 0.448
LOC104601540
Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.
      
 0.448
LOC104603628
Splicing regulatory glutamine/lysine-rich protein 1 isoform X1.
   
 
 0.409
LOC104604255
Glutamic acid-rich protein-like isoform X1.
   
 
 0.409
LOC104604252
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
   
 
 0.409
LOC104603625
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
   
 
 0.409
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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